Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field
An overview of the expression pattern of all rice genes in specific tissues and organs at various stages in the entire spatio-temporal developmental cycle from transplanting to harvesting (Growth condition). A total of 48 samples (Sample list) in three replicates were used for hybridization using the Agilent one-color (Cy3) microarray-based gene analysis system. The expression profile for each gene in various tissues is shown as raw data representing Cy3 signal intensity and normalized data (log2). Search options include keyword search for individual RAP locus ID and accession number, or chromosome search to get a list of all genes for each chromosome.
Organs / Tissues used for analysis
leaf blade
leaf sheath
root
stem
panicle
anther
pistil
lemma/palea
ovary
embryo
endosperm
Keyword searchHelp
Enter RAP locus ID, MSU ID, Accession number, or gene name.
Chromosome / Region search
Click a chromosome to get a tabular list of all genes in sequential order.
Correlation analysis to determine the extent to which changes in the expression level of a gene are linearly associated with changes in the expression level of other genes.
T-test and fold change (FC) analysis to determine all genes with significant difference in expression levels between two samples at a specified fold change.