Data Sets

This database provides an overview of the expression pattern of all rice genes in specific tissues/organs at various stages of growth and development under normal field conditions, rice plants treated with various phytohormones, and cell/tissue types isolated by laser microdissection( LMD) . The gene expression profiles are presented as data sets from specific samples, experiments, or treatment conditions. The Data Table includes a list of samples used for microarray analysis and other relevant information that maybe useful in interpretation of gene expression levels.

Field / Development

RXP_0001 Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field Sample list
RXP_0002 Diurnal and circadian gene expression profile of leaf throughout entire growth Sample list
RXP_0003 Leaf gene expression profile throughout entire growth in the field (12:00) Sample list
RXP_0004 Leaf gene expression profile throughout entire growth in the field (00:00) Sample list
RXP_0005 Leaf gene expression profile during sunrise Sample list
RXP_0006 Leaf gene expression profile during sunset Sample list
RXP_0007 Root gene expression profile throughout entire growth in the field (12:00) Sample list
RXP_0008 Root gene expression profile throughout entire growth in the field (00:00) Sample list
RXP_0009 Diurnal and circadian gene expression profile of root Sample list
RXP_0010 Gene expression profile during reproductive organ development Sample list
RXP_0011 Grain gene expression profile at early developmental stage Sample list
RXP_0012 Embryo and Endosperm gene expression profile at ripening stage Sample list

Plant Hormone

Hormones RXP_1000 Global gene expression profile in response to plant hormones Sample list
Abscisic acid RXP_1001 Root gene expression profile in response to abscisic acid Sample list
RXP_1006 Shoot gene expression profile in response to abscisic acid Sample list
Gibberellin RXP_1002 Root gene expression profile in response to gibberellin Sample list
RXP_1007 Shoot gene expression profile in response to gibberellin Sample list
Auxin RXP_1003 Root gene expression profile in response to auxin Sample list
RXP_1008 Shoot gene expression profile in response to auxin Sample list
Brassinosteroid RXP_1004 Root gene expression profile in response to brassinosteroid Sample list
RXP_1009 Shoot gene expression profile in response to brassinosteroid Sample list
Cytokinin RXP_1005 Root gene expression profile in response to cytokinin Sample list
RXP_1010 Shoot gene expression profile in response to cytokinin Sample list
Jasmonic acid RXP_1011 Root gene expression profile in response to jasmonic acid Sample list
RXP_1012 Shoot gene expression profile in response to jasmonic acid Sample list

Responses to pathogen inoculation

RXP_3001 Gene expression profiles in whole leaf inoculated with Magnaporthe oryzae Sample list
RXP_3002 Gene expression profiles in whole leaf inoculated with Xanthomonas oryzae Sample list
RXP_3003 Gene expression profiles in whole root inoculated with Magnaporthe oryzae Sample list

Cell- and Tissue-Type (Laser Microdissection)

RXP_4001 Root gene expression profile covering various developmental stages and tissue-types Sample list
RXP_4002 Gene expression profile during early embryogenesis Sample list

Nutrient

RXP_5002 Root gene expression profile in response to nutrients Sample list

National Institute of Agrobiological Sciences

Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan